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Predicting DNA binding proteins using support vector machine with hybrid fractal features.
FBP1 is a single stranded DNA binding protein that induces expression of MYC by binding to the FUSE site on the MYC promoter.
To determine if any of the patterns have an identity to known DNA motifs for such DNA binding proteins as transcription factors we analysed the patterns identified by WEKA as distinguishing each region class using TOMTOM software (http://meme.nbcr.net/meme/) using the Jasper and UniPROBE databases for the TOMTOM search.